Publications

Adlin Pinheiro, Cody Karjadi, Yorghos Tripodis, Vijaya B. Kolachalama, Kathryn L. Lunetta, Serkalem Demissie, Chunyu Liu, Rhoda Au, Shariq Mohammed (2025). Predicting cognitive impairment using novel functional features of spatial proximity and circularity in the digital clock drawing test. Alzheimer’s & Dementia (Suppl.), 2025.

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Kimberly Dukes, Pengsheng Ni, Julie Alperen, Nina Cesare, Michael LaValley, Tara Tripp, Kevin Lane, Shariq Mohammed, Prasad Patil, Danielle Emig, Michael Winter, Brandeus Davis, Biqi Wang, Abhi Jain, Michael Acker, Michael Rickles (2025). A national growth mixture modeling analysis of county-level COVID-19 incidence rate trajectories and health inequities during three successive pandemic waves in 2020. Scientific Reports, 15(1): 41272 (2025).

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Brian Gibbs, Jhase Sniderman, Shariq Mohammed, Michael Kain, David Freccero, Ayesha Abdeen, on behalf of the PEPPER Investigators (2025). Association Between Tourniquet Use and Patient‑Reported Outcomes Following Total Knee Arthroplasty: A Multicenter Comparison. Journal of Bone & Joint Surgery, 107(9): 976–984 (2025).

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Divya Veerapaneni, Naveen Arunachalam Sakthiyendran, Yili Du, Leigh Ann Mallinger, Allyson L. Reinert, So Yeon Kim, Chuong Nguyen, Ali Daneshmand, Mohamad Abdalkader, Shariq Mohammed, Josée Dupuis, Kevin N. Sheth, Emily J. Gilmore, David M. Greer, Charlene J. Ong (2025). Early Pupil Abnormality Frequency Predicts Poor Outcomes and Enhances IMPACT Model Prognostication in Traumatic Brain Injury. Critical Care Explorations, 7(5): e1257 (2025).

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Jonathan J. Song, Rebecca A. Stafford, Jack E. Pohlmann, Ivy So Yeon Kim, Maanyatha Cheekati, Sydney Dennison, Benjamin Brush, Stefanos Chatzidakis, Qiuxi Huang, Stelios M. Smirnakis, Emily J. Gilmore, Shariq Mohammed, Mohamad Abdalkader, Emelia J. Benjamin, Josée Dupuis, David M. Greer, Charlene J. Ong (2025). Later midline shift is associated with better post-hospitalization discharge status after large middle cerebral artery stroke. Scientific Reports, 15, 11738 (2025).

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Adlin Pinheiro, Shariq Mohammed, Oluchi Ekenze, Hugo Aparicio, Antreas Charidimou, Vasileios Lioutas, Alexa Beiser, Charles DeCarli, Sudha Seshadri, Serkalem Demissie, Jose R. Romero (2025). Lifelong trends in vascular risk factors and cerebral small vessel disease. ISC 2025 — Stroke (Suppl.).

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Yili Du, Jack E. Pohlmann, Stefanos Chatzidakis, Benjamin Brush, Leigh Ann Mallinger, Rebecca A. Stafford, Anna M. Cervantes‑Arslanian, Emelia J. Benjamin, Emily J. Gilmore, Josée Dupuis, David M. Greer, Stelios M. Smirnakis, Shariq Mohammed, Charlene J. Ong (2025). Quantitative Pupillometry Predicts Neurologic Deterioration in Patients with Large Middle Cerebral Artery Stroke. Annals of Neurology, 97(5): 930–941 (2025).

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Leigh Ann Mallinger, Caroline F. Behm, Yili Du, Jack E. Pohlmann, Emily J. Gilmore, David M. Greer, Shariq Mohammed, Charlene J. Ong (2024). Quantitative Pupillometry Post‑Surgical Decompression Predicts Severe Neurologic Disability in Patients with Acute Brain Injury. NCS 2024 (San Diego).

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Shariq Mohammed, Maria Masotti, Nathaniel Osher, Satwik Acharyya, Veerabhadran Baladandayuthapani (2024). Statistical Analysis of Quantitative Cancer Imaging Data. Statistics and Data Science in Imaging, 1(1): 2405348 (2024).

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Abhi Jain, Michael LaValley, Kimberly Dukes, Kevin Lane, Michael Winter, Keith R. Spangler, Nina Cesare, Biqi Wang, Michael Rickles, Shariq Mohammed (2024). Modeling health and well-being measures using ZIP code spatial neighborhood patterns. Scientific Reports, 14(1): 9180 (2024).

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Thierry Chekouo, Francesco C. Stingo, Shariq Mohammed, Arvind Rao, Veerabhadran Baladandayuthapani (2023). Bayesian group selection with compositional responses for analysis of radiologic tumor proportions and their genomic determinants. Annals of Applied Statistics, 17(4): 3013–3034 (2023).

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Shariq Mohammed, Sebastian Kurtek, Karthik Bharath, Arvind Rao, Veerabhadran Baladandayuthapani (2023). Tumor radiogenomics in gliomas with Bayesian layered variable selection. Medical Image Analysis, 90, 102964 (2023).

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Michael F. Romano, Xiao Zhou, Akshara R. Balachandra, Michalina F. Jadick, Shangran Qiu, Diya A. Nijhawan, Prajakta S. Joshi, Shariq Mohammed, Peter H. Lee, Maximilian J. Smith, Aaron B. Paul, Asim Z. Mian, Juan E. Small, Sang P. Chin, Rhoda Au, Vijaya B. Kolachalama (2023). Deep learning for risk‑based stratification of cognitively impaired individuals. iScience, 26(9): 107522 (2023).

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Elisa Warner, Joonsang Lee, Santhoshi Krishnan, Nicholas C. Wang, Shariq Mohammed, Ashok Srinivasan, Jayapalli R. Bapuraj, Arvind Rao (2023). Low‑parameter supervised learning models can discriminate pseudoprogression and true progression in non‑perfusion‑based MRI. IEEE EMBC 2023 (Proceedings), pp. 1–4 (2023).

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Aritra Halder, Shariq Mohammed, Dipak K. Dey (2023). Bayesian variable selection in double generalized linear Tweedie spatial process models. The New England Journal of Statistics in Data Science (NEJSDS), 1(2): 187–199 (2023).

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Rupam Bhattacharyya, Sayantan Banerjee, Shariq Mohammed, Veerabhadran Baladandayuthapani (2022). Network-based Modeling of COVID-19 Dynamics: Early Pandemic Spread in India. Journal of the Indian Statistical Association, 59(2), 1–43 (2021).

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Aritra Halder, Shariq Mohammed, Kun Chen, Dipak K. Dey (2022). Spatial risk estimation in Tweedie compound Poisson double generalized linear models. In 2022 Proceedings of International E-Conference on Mathematical and Statistical Sciences: A Selçuk Meeting (ICOMSS’22).

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Sevcan Turk, Nicholas C. Wang, Omer Kitis, Shariq Mohammed, Tianwen Ma, Remy Lobo, John Kim, Sandra Camelo-Piragua, Timothy D. Johnson, Michelle M. Kim, Larry Junck, Toshio Moritani, Ashok Srinivasan, Arvind Rao, Jayapalli R. Bapuraj (2022). Comparative study of radiologists vs machine learning in differentiating biopsy-proven pseudoprogression and true progression in diffuse gliomas. Neuroscience Informatics, 2(3), 100088 (2022).

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Snigdha Panigrahi, Shariq Mohammed, Arvind Rao, Veerabhadran Baladandayuthapani (2022). Integrative Bayesian Models Using Post-Selective Inference: A Case Study in Radiogenomics. Biometrics, 79(3), 1801–1813 (2023).

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Angel Qin, Fatima Lima, Samantha Bell, Gregory P. Kalemkerian, Bryan J. Schneider, Nithya Ramnath, Madelyn Lew, Santhoshi N. Krishnan, Shariq Mohammed, Arvind Rao, Timothy L. Frankel (2022). Cellular engagement and interaction in the tumor microenvironment predict non-response to PD-1/PD-L1 inhibitors in metastatic non-small cell lung cancer. Scientific Reports, 12, 9054 (2022).

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Santhoshi N. Krishnan, Shariq Mohammed, Timothy L. Frankel, Arvind Rao (2022). GaWRDenMap: A quantitative framework to study the local variation in cell-cell interactions in pancreatic disease subtypes. Scientific Reports, 12, 3708 (2022).

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Shariq Mohammed, Karthik Bharath, Sebastian Kurtek, Arvind Rao, Veerabhadran Baladandayuthapani (2021). RADIOHEAD: Radiogenomic analysis incorporating tumor heterogeneity in imaging through densities. Annals of Applied Statistics, 15(4), 1808–1830 (2021).

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Shariq Mohammed, Visweswaran Ravikumar, Elisa Warner, Sohil H. Patel, Spyridon Bakas, Arvind Rao, Rajan Jain (2021). Quantifying T2-FLAIR mismatch using geographically weighted regression and predicting molecular status in lower-grade gliomas. American Journal of Neuroradiology, 43(1), 33–39 (2022).

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Aritra Halder, Shariq Mohammed, Kun Chen, Dipak K. Dey (2021). Spatial Tweedie exponential dispersion models: An application to insurance rate-making. Scandinavian Actuarial Journal, 2021(10), 1017–1036.

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Shariq Mohammed, Dipak K. Dey (2021). Scalable spatio-temporal Bayesian analysis of high-dimensional electroencephalography data. Canadian Journal of Statistics, 49(1), 107–128 (2021).

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Joonsang Lee, Nicholas C. Wang, Sevcan Turk, Shariq Mohammed, Remy Lobo, John Kim, Eric Liao, Sandra Camelo-Piragua, Michelle M. Kim, Larry Junck, Jayapalli R. Bapuraj, Ashok Srinivasan, Arvind Rao (2020). Discriminating pseudoprogression and true progression in diffuse infiltrating glioma using multi-parametric MRI data through deep learning. Scientific Reports, 10, 20331 (2020).

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Shariq Mohammed, Tingyang Li, Xing D. Chen, Elisa Warner, Anand Shankar, Maria Fernanda Abalem, Thiran Jayasundera, Thomas W. Gardner, Arvind Rao (2020). Density-based classification in diabetic retinopathy through thickness of retinal layers from optical coherence tomography. Scientific Reports, 10, 15937 (2020).

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Thierry Chekouo, Shariq Mohammed, Arvind Rao (2020). A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas. NeuroImage: Clinical, 28, 102437 (2020).

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Shariq Mohammed, Dipak K. Dey, Yuping Zhang (2020). Classification of high-dimensional electroencephalography data with location selection using structured spike-and-slab prior. Statistical Analysis and Data Mining: The ASA Data Science Journal, 13(5), 465–481 (2020).

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Debashree Ray, Maxwell Salvatore, Rupam Bhattacharyya, Lili Wang, Jiacong Du, Shariq Mohammed, Soumik Purkayastha, Aritra Halder, Alexander Rix, Daniel Barker, Michael Kleinsasser, Yiwang Zhou, Debraj Bose, Peter Song, Mousumi Banerjee, Veerabhadran Baladandayuthapani, Parikshit Ghosh, Bhramar Mukherjee (2020). Predictions, Role of Interventions, and Effects of a Historic National Lockdown in India's Response to the COVID-19 Pandemic: Data Science Call to Arms. Harvard Data Science Review, Special Issue 1: COVID‑19—Unprecedented Challenges and Chances (2020).

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Rupam Bhattacharyya, Shariq Mohammed, Veerabhadran Baladandayuthapani, Sayantan Banerjee, Upali Nanda (2020). Regional contact networks and the pandemic spread of COVID-19 in India. medium.com.

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Veerabhadran Baladandayuthapani, Sayantan Banerjee, Rupam Bhattacharyya, Shariq Mohammed, Upali Nanda (2020). Covid-19: India must urgently manage regional contact networks. bloombergquint.com.

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James Matuk, Shariq Mohammed, Sebastian Kurtek, Karthik Bharath (2020). Biomedical applications of geometric functional data analysis. Handbook of Variational Methods for Nonlinear Geometric Data (Springer), pp. 675–701.

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Maxwell Salvatore, Lili Wang, Rupam Bhattacharyya, Soumik Purkayastha, Shariq Mohammed, Aritra Halder, Daniel Barker, Michael Kleinsasser, Alexander Rix, Mousumi Banerjee, Veerabhadran Baladandayuthapani, Debashree Ray, Bhramar Mukherjee (2020). Historic 21-day lockdown, predictions for lockdown effects and the role of data in this crisis of virus in India. medium.com.

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Debashree Ray, Rupam Bhattacharyya, Lili Wang, Maxwell Salvatore, Shariq Mohammed, Aritra Halder, Yiwang Zhou, Peter Song, Soumik Purkayastha, Debraj Bose, Mousumi Banerjee, Veerabhadran Baladandayuthapani, Parikshit Ghosh, Bhramar Mukherjee (2020). Predictions and role of interventions for COVID-19 outbreak in India. medium.com.

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Shariq Mohammed, Dipak K. Dey, Yuping Zhang (2019). Bayesian variable selection using spike-and-slab priors with application to high dimensional electroencephalography data by local modelling. Journal of the Royal Statistical Society: Series C (Applied Statistics), 68(5), 1305–1326 (2019).

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Shariq Mohammed, Dipak K. Dey (2019). Assessing malaria using neutral zone classifiers with mixture discriminant analysis on 2D images of red blood cells. Journal of Biostatistics and Epidemiology, 5(1), 1–11 (2019).

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Sanjay P. Bhat, M. Uday Kumar, Shariq Mohammed (2016). A dynamical systems approach to systemic risk in a financial network. In 2016 Indian Control Conference (ICC).

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